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To reproduce the problem:

Add a few grade items to a course
Set the aggregation to "Sum of grade"
Set to Aggregate only non-empty grades
Set user report setting "Hide totals if they contain hidden items" to "Show totals excluding hidden items"
Hide one of the grade items
Enter grades for a user only for the visible items
View the user report for the user. You will notice that the course total is not accurate. It should be a sum of the entered grades, but it is grater than that.

For example:
Item 01 - 50/100
Item 02 (hidden) - empty
Item 03 - 50/100

user report shows a course total of 150 rather than the expected 100.

has a non-specific relationship to

MDL-19151 Disable "Aggregate only non-empty grades" for SUM aggregation

MDL-36435 "Aggregate non-empty grades" does not work with Sum of Grades aggregation

MDL-38827 If "Aggregate only non-empty grades" is NOT selected for grade category then total is displayed as dashes instead of zeros.

has been marked as being related by

MDL-35984 Gradebook Sum of grades shows wrong total if items are hidden

MDL-13731 problem with 1-point and/or hidden grade items

MDL-30142 Inconsistency Between Student/Teacher Category Grade

will help resolve

MDL-36239 Incorrect total on user grade report when showing totals excluding hidden items and sum of grades aggregation

(1 has been marked as being related by, 1 will help resolve)

Participants:: Andrew Davis, B. Friesen, Colin Campbell, Grady Miller, Marina Glancy, Timothy Allen